Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008239.1 Corchorus olitorius cultivar O-4 contig08266, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1078
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.27


Found at i:70 original size:23 final size:23

Alignment explanation


    Indices: 8--72  Score: 69
    Period size: 23  Copynumber: 2.9  Consensus size: 23

          1 ATGAAAA

                       *           
          8 ACGCAAAAAC-CTTTTTTTTATG
          1 ACGCAAAAACAATTTTTTTTATG

                 *      **         
         30 ACGCAGAAACAAAATTTTTTATG
          1 ACGCAAAAACAATTTTTTTTATG

                     * *        
         53 ACGCAAAAATATTTTTTTTT
          1 ACGCAAAAACAATTTTTTTT

         73 TCGATGCAAA


Statistics
Matches: 33,  Mismatches: 9, Indels: 1
        0.77            0.21        0.02

Matches are distributed among these distances:
  22    9  0.27
  23   24  0.73

ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40


Consensus pattern (23 bp):   
ACGCAAAAACAATTTTTTTTATG

Found at i:473 original size:16 final size:15

Alignment explanation


    Indices: 435--476  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        425 ACAGAGATTG

                   *       
        435 ACAGAAAGCAATTAA
          1 ACAGAAAACAATTAA

                           
        450 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                        
        465 ACTAGAAAACAA
          1 AC-AGAAAACAA

        477 AGCAGAGTAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   16  0.64
  16    9  0.36

ACGTcount: A:0.64, C:0.14, G:0.10, T:0.12


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.