Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000824.1 Corchorus olitorius cultivar O-4 contig00824, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 986

Length: 1644
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33


Found at i:1364 original size:11 final size:11

Alignment explanation


    Indices: 1348--1374  Score: 54
    Period size: 11  Copynumber: 2.5  Consensus size: 11

       1338 AAGTTTCCTA

                       
       1348 TATATTTAAAT
          1 TATATTTAAAT

                       
       1359 TATATTTAAAT
          1 TATATTTAAAT

                 
       1370 TATAT
          1 TATAT

       1375 CATTATCAAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   16  1.00

ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56


Consensus pattern (11 bp):   
TATATTTAAAT
Done.