Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008247.1 Corchorus olitorius cultivar O-4 contig08274, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 730

Length: 1217
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39


Found at i:337 original size:30 final size:30

Alignment explanation


    Indices: 273--337  Score: 94
    Period size: 30  Copynumber: 2.2  Consensus size: 30

        263 TACATATTAC

                                      *  *
        273 TAATAATAAGTTTAATAATTATAATACCAC
          1 TAATAATAAGTTTAATAATTATAATAACAA

                                  *    *  
        303 TAATAATAAGTTTAATAATTATTATAATAA
          1 TAATAATAAGTTTAATAATTATAATAACAA

                 
        333 TAATA
          1 TAATA

        338 GTCTAAATTA


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40


Consensus pattern (30 bp):   
TAATAATAAGTTTAATAATTATAATAACAA
Done.