Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008259.1 Corchorus olitorius cultivar O-4 contig08286, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1006
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.36

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:245 original size:7 final size:7

Alignment explanation


    Indices: 233--259  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

        223 TTTGCCAAAT

                   
        233 TGTTTGC
          1 TGTTTGC

                   
        240 TGTTTGC
          1 TGTTTGC

                   
        247 TGTTTGC
          1 TGTTTGC

                  
        254 TGTTTG
          1 TGTTTG

        260 TGATTGGATG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.00, C:0.11, G:0.30, T:0.59


Consensus pattern (7 bp):   
TGTTTGC

Done.