Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000826.1 Corchorus olitorius cultivar O-4 contig00826, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1038
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:761 original size:17 final size:17

Alignment explanation


    Indices: 736--771  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        726 TGTACTTTAT

                     *       
        736 TTTGCTTTTGTGTTTTG
          1 TTTGCTTTTATGTTTTG

                *            
        753 TTTGTTTTTATGTTTTG
          1 TTTGCTTTTATGTTTTG

              
        770 TT
          1 TT

        772 GGATCTTATT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.03, C:0.03, G:0.19, T:0.75


Consensus pattern (17 bp):   
TTTGCTTTTATGTTTTG
Done.