Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008265.1 Corchorus olitorius cultivar O-4 contig08292, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 840

Length: 1400
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.34


Found at i:881 original size:21 final size:21

Alignment explanation


    Indices: 855--947  Score: 143
    Period size: 21  Copynumber: 4.4  Consensus size: 21

        845 TGCTAGAAGT

                                 
        855 TCATTGGAGCAAGTTCCAAGC
          1 TCATTGGAGCAAGTTCCAAGC

                                 
        876 TCATTGGAGCAAGTTCCAAGC
          1 TCATTGGAGCAAGTTCCAAGC

                       *        *
        897 TCATTGGAGCAGGTTCCAAGT
          1 TCATTGGAGCAAGTTCCAAGC

                                 *
        918 TCATTGGAG-AAGGTTCCAAGA
          1 TCATTGGAGCAA-GTTCCAAGC

                     
        939 TCATTGGAG
          1 TCATTGGAG

        948 ATGCCTAAGA


Statistics
Matches: 67,  Mismatches: 4, Indels: 2
        0.92            0.05        0.03

Matches are distributed among these distances:
  20    1  0.01
  21   66  0.99

ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26


Consensus pattern (21 bp):   
TCATTGGAGCAAGTTCCAAGC

Done.