Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008269.1 Corchorus olitorius cultivar O-4 contig08296, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 668

Length: 1114
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:430 original size:22 final size:22

Alignment explanation


    Indices: 402--445  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        392 CCTTTTTTTA

                                  
        402 GAACAAAACGCCCGCTAAGATT
          1 GAACAAAACGCCCGCTAAGATT

                                  
        424 GAACAAAACGCCCGCTAAGATT
          1 GAACAAAACGCCCGCTAAGATT

        446 TCCATTTTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.41, C:0.27, G:0.18, T:0.14


Consensus pattern (22 bp):   
GAACAAAACGCCCGCTAAGATT
Done.