Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01008270.1 Corchorus olitorius cultivar O-4 contig08297, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11189

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1575--1609
2
17.0
2
94
5
61
48
2
0
48
1.16
1781--1892
56
2.0
56
96
0
206
33
24
2
40
1.69
1959--2038
42
1.9
42
92
0
133
31
8
12
47
1.72
1958--2025
21
3.2
21
64
15
50
30
7
11
50
1.66
1973--2038
21
3.2
20
70
16
62
31
9
10
48
1.69
3443--3477
3
11.3
3
87
6
52
65
0
31
2
1.07
11043--11101
30
2.0
30
82
0
73
25
40
20
13
1.89
11109--11181
15
4.9
15
77
3
67
15
67
4
13
1.38
11112--11167
12
4.7
12
79
0
58
14
69
3
12
1.31
11115--11179
21
3.1
21
79
0
76
16
67
3
12
1.34

Tables:   1

The End!