Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008278.1 Corchorus olitorius cultivar O-4 contig08305, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 683

Length: 1139
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.29


Found at i:668 original size:58 final size:60

Alignment explanation


    Indices: 556--675  Score: 199
    Period size: 58  Copynumber: 2.0  Consensus size: 60

        546 TGGCGATATT

                                                  *                       
        556 TCATAATTATTTTTAGTATTTAAAAAAAAAAGCATAACTTGGCATGCCAAAATAGCTTTAAC
          1 TCATAATTATTTTTAGTATTT--AAAAAAAAGCATAACATGGCATGCCAAAATAGCTTTAAC

                                                                        
        618 TCATAATTATTTTTAGTATTT-AAAAAAA-CATAACATGGCATGCCAAAATAGCTTTAAC
          1 TCATAATTATTTTTAGTATTTAAAAAAAAGCATAACATGGCATGCCAAAATAGCTTTAAC

        676 AAGTATAGAT


Statistics
Matches: 57,  Mismatches: 1, Indels: 4
        0.92            0.02        0.06

Matches are distributed among these distances:
  58   29  0.51
  59    7  0.12
  62   21  0.37

ACGTcount: A:0.43, C:0.13, G:0.09, T:0.34


Consensus pattern (60 bp):   
TCATAATTATTTTTAGTATTTAAAAAAAAGCATAACATGGCATGCCAAAATAGCTTTAAC
Done.