Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008284.1 Corchorus olitorius cultivar O-4 contig08311, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 697

Length: 1163
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31


Found at i:310 original size:17 final size:17

Alignment explanation


    Indices: 288--322  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        278 GCCTATAATT

                             
        288 AATTAAACTAATGTGAA
          1 AATTAAACTAATGTGAA

                             
        305 AATTAAACTAATGTGAA
          1 AATTAAACTAATGTGAA

             
        322 A
          1 A

        323 GCATGCATAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.54, C:0.06, G:0.11, T:0.29


Consensus pattern (17 bp):   
AATTAAACTAATGTGAA
Done.