Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008288.1 Corchorus olitorius cultivar O-4 contig08315, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1022
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:380 original size:3 final size:3

Alignment explanation


    Indices: 374--452  Score: 131
    Period size: 3  Copynumber: 25.3  Consensus size: 3

        364 TTTTTTTAAC

                                                                          
        374 ATA ATA ATA TATA ATA ATA ATA ATA ATAA ATA ATAA ATA ATA ATA ATA
          1 ATA ATA ATA -ATA ATA ATA ATA ATA AT-A ATA AT-A ATA ATA ATA ATA

                                                     
        422 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A

        453 GAGGGGAAAG


Statistics
Matches: 73,  Mismatches: 0, Indels: 6
        0.92            0.00        0.08

Matches are distributed among these distances:
   3   64  0.88
   4    9  0.12

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
ATA

Done.