Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008290.1 Corchorus olitorius cultivar O-4 contig08317, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4779
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32


Found at i:4756 original size:6 final size:6

Alignment explanation


    Indices: 4745--4779  Score: 70
    Period size: 6  Copynumber: 5.8  Consensus size: 6

       4735 CAATAAAATA

                                                    
       4745 TATATC TATATC TATATC TATATC TATATC TATAT
          1 TATATC TATATC TATATC TATATC TATATC TATAT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   29  1.00

ACGTcount: A:0.34, C:0.14, G:0.00, T:0.51


Consensus pattern (6 bp):   
TATATC

Done.