Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008292.1 Corchorus olitorius cultivar O-4 contig08319, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1843
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:1254 original size:24 final size:24

Alignment explanation


    Indices: 1226--1271  Score: 92
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       1216 TCGCAGGTCA

                                    
       1226 ACGTTGTGGAAGATTTTGACCATC
          1 ACGTTGTGGAAGATTTTGACCATC

                                  
       1250 ACGTTGTGGAAGATTTTGACCA
          1 ACGTTGTGGAAGATTTTGACCA

       1272 CAACAGTAGT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33


Consensus pattern (24 bp):   
ACGTTGTGGAAGATTTTGACCATC
Done.