Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008299.1 Corchorus olitorius cultivar O-4 contig08326, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1097
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34


Found at i:132 original size:25 final size:24

Alignment explanation


    Indices: 96--143  Score: 71
    Period size: 26  Copynumber: 2.0  Consensus size: 24

         86 TCCTTCTATT

                                    
         96 CATCTATCATC-AAGTTTTTCAAC
          1 CATCTATCATCAAAGTTTTTCAAC

                                     
        119 CATCTCATCCATCAAAGTTTTTCAA
          1 CATCT-AT-CATCAAAGTTTTTCAA

        144 ATTTTCTAGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  23    5  0.23
  24    2  0.09
  25    4  0.18
  26   11  0.50

ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38


Consensus pattern (24 bp):   
CATCTATCATCAAAGTTTTTCAAC

Done.