Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008301.1 Corchorus olitorius cultivar O-4 contig08328, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1006
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.30


Found at i:162 original size:53 final size:52

Alignment explanation


    Indices: 45--163  Score: 195
    Period size: 53  Copynumber: 2.3  Consensus size: 52

         35 AAGGATGATG

                                          *                     
         45 GTCAAACCCCAAAATTCAATAGTCAAACCACAATCACCATTGTACATGCATA
          1 GTCAAACCCCAAAATTCAATAGTCAAACCAAAATCACCATTGTACATGCATA

                                                  *               
         97 GTCAAACCCCAAAATTCAATAGTCAAACTACAAAAT-ATCATTGTACATGCATA
          1 GTCAAACCCCAAAATTCAATAGTCAAAC--CAAAATCACCATTGTACATGCATA

                          
        150 GTCAAACCCCAAAA
          1 GTCAAACCCCAAAA

        164 GATGATGTTA


Statistics
Matches: 63,  Mismatches: 2, Indels: 3
        0.93            0.03        0.04

Matches are distributed among these distances:
  52   28  0.44
  53   30  0.48
  54    5  0.08

ACGTcount: A:0.45, C:0.27, G:0.08, T:0.21


Consensus pattern (52 bp):   
GTCAAACCCCAAAATTCAATAGTCAAACCAAAATCACCATTGTACATGCATA
Done.