Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008305.1 Corchorus olitorius cultivar O-4 contig08332, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1681
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27


Found at i:1594 original size:19 final size:20

Alignment explanation


    Indices: 1572--1612  Score: 57
    Period size: 19  Copynumber: 2.1  Consensus size: 20

       1562 ACGAAAAAAG

                                
       1572 AAGTAAAAATTGAAAA-TGA
          1 AAGTAAAAATTGAAAATTGA

                **              
       1591 AAGTGGAAATTGAAAATTGA
          1 AAGTAAAAATTGAAAATTGA

              
       1611 AA
          1 AA

       1613 AAGTATAAGA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  19   14  0.74
  20    5  0.26

ACGTcount: A:0.59, C:0.00, G:0.20, T:0.22


Consensus pattern (20 bp):   
AAGTAAAAATTGAAAATTGA
Done.