Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008306.1 Corchorus olitorius cultivar O-4 contig08333, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1166
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Found at i:533 original size:33 final size:33

Alignment explanation


    Indices: 482--586  Score: 120
    Period size: 33  Copynumber: 3.1  Consensus size: 33

        472 AAGAATTTCA

                                             
        482 TTAAGTTTTTAATTGGGAAAGTTCCCACTAGTT
          1 TTAAGTTTTTAATTGGGAAAGTTCCCACTAGTT

                *        *          *   **   
        515 TTAAATTTTTAATCGGGAAAGTTCTCACCGGTT
          1 TTAAGTTTTTAATTGGGAAAGTTCCCACTAGTT

                                          *      
        548 TTAAGTTTTTAAAAATTGGGAAAGTTCCCATTCAGTT
          1 TTAAGTTTTT---AATTGGGAAAGTTCCCACT-AGTT

              
        585 TT
          1 TT

        587 TTTTGCAAAA


Statistics
Matches: 57,  Mismatches: 11, Indels: 4
        0.79            0.15        0.06

Matches are distributed among these distances:
  33   37  0.65
  36   15  0.26
  37    5  0.09

ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42


Consensus pattern (33 bp):   
TTAAGTTTTTAATTGGGAAAGTTCCCACTAGTT
Done.