Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008307.1 Corchorus olitorius cultivar O-4 contig08334, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2927
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35


Found at i:1091 original size:20 final size:20

Alignment explanation


    Indices: 1058--1097  Score: 53
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1048 ACAACTTTTT

                     *    *     
       1058 TTATACTACTAATTTTTATG
          1 TTATACTACAAATTATTATG

                 *              
       1078 TTATATTACAAATTATTATG
          1 TTATACTACAAATTATTATG

       1098 CGATTTATTA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53


Consensus pattern (20 bp):   
TTATACTACAAATTATTATG

Found at i:2539 original size:20 final size:20

Alignment explanation


    Indices: 2502--2541  Score: 53
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       2492 AAATAAAAAA

                    **          
       2502 ATTTTATTTTAATATATTTT
          1 ATTTTATTGAAATATATTTT

                         *      
       2522 ATTTTATTGAAATTTATTTT
          1 ATTTTATTGAAATATATTTT

       2542 TAAAAAAATA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68


Consensus pattern (20 bp):   
ATTTTATTGAAATATATTTT
Done.