Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008316.1 Corchorus olitorius cultivar O-4 contig08343, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 730

Length: 1217
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29


Found at i:40 original size:15 final size:15

Alignment explanation


    Indices: 1--33  Score: 52
    Period size: 13  Copynumber: 2.3  Consensus size: 15

                           
          1 AAAAGAAA-AA-GAA
          1 AAAAGAAAGAAGGAA

                           
         14 AAAAGAAAGAAGGAA
          1 AAAAGAAAGAAGGAA

                 
         29 AAAAG
          1 AAAAG

         34 GGAGAAGACC


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  13    8  0.44
  14    2  0.11
  15    8  0.44

ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00


Consensus pattern (15 bp):   
AAAAGAAAGAAGGAA
Done.