Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008317.1 Corchorus olitorius cultivar O-4 contig08344, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 918

Length: 1530
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35


Found at i:809 original size:36 final size:36

Alignment explanation


    Indices: 769--838  Score: 122
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        759 GAGATTTTGG

                         *                      
        769 AGAAATATGATAATCAAAATTACAAAAAATGTAATA
          1 AGAAATATGATAACCAAAATTACAAAAAATGTAATA

                                       *      
        805 AGAAATATGATAACCAAAATTACAAAAGATGTAA
          1 AGAAATATGATAACCAAAATTACAAAAAATGTAA

        839 GGTTATTGAA


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  36   32  1.00

ACGTcount: A:0.60, C:0.07, G:0.10, T:0.23


Consensus pattern (36 bp):   
AGAAATATGATAACCAAAATTACAAAAAATGTAATA
Done.