Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008322.1 Corchorus olitorius cultivar O-4 contig08349, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 775

Length: 1292
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.47


Found at i:88 original size:12 final size:13

Alignment explanation


    Indices: 65--93  Score: 51
    Period size: 12  Copynumber: 2.3  Consensus size: 13

         55 TAAGTTTGGT

                         
         65 TTCTCTCTTCTTC
          1 TTCTCTCTTCTTC

                         
         78 TTCTC-CTTCTTC
          1 TTCTCTCTTCTTC

                
         90 TTCT
          1 TTCT

         94 TTCGTTTTCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   11  0.69
  13    5  0.31

ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62


Consensus pattern (13 bp):   
TTCTCTCTTCTTC
Done.