Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008330.1 Corchorus olitorius cultivar O-4 contig08357, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 839

Length: 1399
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28


Found at i:807 original size:21 final size:21

Alignment explanation


    Indices: 783--874  Score: 141
    Period size: 21  Copynumber: 4.4  Consensus size: 21

        773 CTTAGGCAAT

                     *   *       
        783 TCCAATGAGTTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                 
        804 TCCAATGAGCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                           *     
        825 TCCAATGAGCTTGGATCCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                  
        846 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        867 TCCAATGA
          1 TCCAATGA

        875 TCTCCTAGCA


Statistics
Matches: 66,  Mismatches: 4, Indels: 2
        0.92            0.06        0.03

Matches are distributed among these distances:
  20    3  0.05
  21   63  0.95

ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.