Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008331.1 Corchorus olitorius cultivar O-4 contig08358, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3923
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35


Found at i:1512 original size:7 final size:7

Alignment explanation


    Indices: 1500--1526  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

       1490 TTGAAAAATT

                   
       1500 ATATATA
          1 ATATATA

                   
       1507 ATATATA
          1 ATATATA

                   
       1514 ATATATA
          1 ATATATA

                  
       1521 ATATAT
          1 ATATAT

       1527 TATAAGAAAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44


Consensus pattern (7 bp):   
ATATATA

Found at i:1821 original size:22 final size:22

Alignment explanation


    Indices: 1795--1850  Score: 94
    Period size: 22  Copynumber: 2.5  Consensus size: 22

       1785 CTTTCCTAAT

                                  
       1795 AAATTTTGATAATTTTTTTATG
          1 AAATTTTGATAATTTTTTTATG

            *       *             
       1817 GAATTTTGGTAATTTTTTTATG
          1 AAATTTTGATAATTTTTTTATG

                        
       1839 AAATTTTGATAA
          1 AAATTTTGATAA

       1851 CTATACATTA


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  22   30  1.00

ACGTcount: A:0.32, C:0.00, G:0.12, T:0.55


Consensus pattern (22 bp):   
AAATTTTGATAATTTTTTTATG
Done.