Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008333.1 Corchorus olitorius cultivar O-4 contig08360, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 771

Length: 1285
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29


Found at i:202 original size:17 final size:16

Alignment explanation


    Indices: 168--225  Score: 73
    Period size: 17  Copynumber: 3.6  Consensus size: 16

        158 CGGGTTGATC

                            
        168 GGGTTCGGGTCATTTT
          1 GGGTTCGGGTCATTTT

                 *           
        184 GGGTTTGGGTCATTTTT
          1 GGGTTCGGGTCA-TTTT

                        *   
        201 GGGTTCGGGTC-GTTT
          1 GGGTTCGGGTCATTTT

              *       
        216 GGATTCGGGT
          1 GGGTTCGGGT

        226 ACCCAAAATT


Statistics
Matches: 37,  Mismatches: 4, Indels: 3
        0.84            0.09        0.07

Matches are distributed among these distances:
  15   12  0.32
  16   11  0.30
  17   14  0.38

ACGTcount: A:0.05, C:0.10, G:0.41, T:0.43


Consensus pattern (16 bp):   
GGGTTCGGGTCATTTT

Found at i:274 original size:17 final size:17

Alignment explanation


    Indices: 234--274  Score: 50
    Period size: 16  Copynumber: 2.5  Consensus size: 17

        224 GTACCCAAAA

                             
        234 TTTCGGGTCATTTCTGG
          1 TTTCGGGTCATTTCTGG

            *                 
        251 GTT-GGGTCAGTTTC-GG
          1 TTTCGGGTCA-TTTCTGG

                    
        267 TTTCGGGT
          1 TTTCGGGT

        275 TGGGCGGATT


Statistics
Matches: 20,  Mismatches: 2, Indels: 4
        0.77            0.08        0.15

Matches are distributed among these distances:
  16   10  0.50
  17   10  0.50

ACGTcount: A:0.05, C:0.15, G:0.37, T:0.44


Consensus pattern (17 bp):   
TTTCGGGTCATTTCTGG
Done.