Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008335.1 Corchorus olitorius cultivar O-4 contig08362, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 885

Length: 1475
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:449 original size:29 final size:31

Alignment explanation


    Indices: 386--453  Score: 97
    Period size: 29  Copynumber: 2.3  Consensus size: 31

        376 ATCAGAGGGT

                                *          
        386 AAAATGTCTTGAATTTGGAAGTTCAATGGGC
          1 AAAATGTCTTGAATTTGGAAATTCAATGGGC

                                            
        417 AAAATGTCTTG-ATTT-GAAATTC-ATGGGGC
          1 AAAATGTCTTGAATTTGGAAATTCAAT-GGGC

                    
        446 AAAATGTC
          1 AAAATGTC

        454 CATGACAGAA


Statistics
Matches: 35,  Mismatches: 1, Indels: 4
        0.88            0.03        0.10

Matches are distributed among these distances:
  28    2  0.06
  29   18  0.51
  30    4  0.11
  31   11  0.31

ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32


Consensus pattern (31 bp):   
AAAATGTCTTGAATTTGGAAATTCAATGGGC
Done.