Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008351.1 Corchorus olitorius cultivar O-4 contig08378, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 807

Length: 1345
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.41


Found at i:667 original size:128 final size:128

Alignment explanation


    Indices: 462--706  Score: 402
    Period size: 128  Copynumber: 1.9  Consensus size: 128

        452 GTTATTCAAG

                                   *  *  *            *                      
        462 TGTCGGTTAAAAGGTTATTGTGTGATTTATGGCTTTCGTTAAGGGCTTCAAAGCTGAATTTGATT
          1 TGTCGGTTAAAAGGTTATTGTGTAATCTACGGCTTTCGTTAAAGGCTTCAAAGCTGAATTTGATT

                                *                     *     *               
        527 AATGAGTTTCGTGGAGGGTTTAAGATGG-AATTTTTATGTTTTGTCTCTATAAACAAATATAAT
         66 AATGAGTTTCGTGGAGGGTTCAAGA-GGAAATTTTTATGTTTGGTCTCCATAAACAAATATAAT

                                                                             
        590 TGTCGGTTAAAAGGTTATTGTGTAATCTACGGCTTTCGTTAAAGGCTTCAAAGCTGAATTTGATT
          1 TGTCGGTTAAAAGGTTATTGTGTAATCTACGGCTTTCGTTAAAGGCTTCAAAGCTGAATTTGATT

                           *                                    
        655 AATGAGTTTCGTGGATGGTTCAAGAGGAAATTTTTATGTTTGGTCTCCATAA
         66 AATGAGTTTCGTGGAGGGTTCAAGAGGAAATTTTTATGTTTGGTCTCCATAA

        707 TTAAATTTTT


Statistics
Matches: 108,  Mismatches: 8, Indels: 2
        0.92            0.07        0.02

Matches are distributed among these distances:
 127    2  0.02
 128  106  0.98

ACGTcount: A:0.27, C:0.09, G:0.24, T:0.40


Consensus pattern (128 bp):   
TGTCGGTTAAAAGGTTATTGTGTAATCTACGGCTTTCGTTAAAGGCTTCAAAGCTGAATTTGATT
AATGAGTTTCGTGGAGGGTTCAAGAGGAAATTTTTATGTTTGGTCTCCATAAACAAATATAAT
Done.