Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008353.1 Corchorus olitorius cultivar O-4 contig08380, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 814

Length: 1358
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:734 original size:27 final size:26

Alignment explanation


    Indices: 679--740  Score: 65
    Period size: 27  Copynumber: 2.3  Consensus size: 26

        669 TCTAAATTTT

                                        
        679 TATTATTTTAATAATGGAATAATTAAAA
          1 TATTA-TTTAATAATGGAAT-ATTAAAA

                     *                  
        707 TATTATTTAGTAATGGCAAT-TTAGAAA
          1 TATTATTTAATAATGG-AATATTA-AAA

                    
        734 TA-TATTT
          1 TATTATTT

        741 GACAAAAAAG


Statistics
Matches: 31,  Mismatches: 1, Indels: 6
        0.82            0.03        0.16

Matches are distributed among these distances:
  26    8  0.26
  27   15  0.48
  28    8  0.26

ACGTcount: A:0.44, C:0.02, G:0.10, T:0.45


Consensus pattern (26 bp):   
TATTATTTAATAATGGAATATTAAAA

Found at i:863 original size:21 final size:22

Alignment explanation


    Indices: 824--877  Score: 67
    Period size: 21  Copynumber: 2.5  Consensus size: 22

        814 TATTTTTATG

                           *     *
        824 AAATTTTGAT-ATTCCCCTATC
          1 AAATTTTGATAATTCACCTATA

                                  
        845 AAATTTTGATAATT-ACCTATA
          1 AAATTTTGATAATTCACCTATA

                 *      
        866 AAATTGTGATAA
          1 AAATTTTGATAA

        878 ACTCTATATG


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  21   26  0.90
  22    3  0.10

ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41


Consensus pattern (22 bp):   
AAATTTTGATAATTCACCTATA
Done.