Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000836.1 Corchorus olitorius cultivar O-4 contig00836, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 602

Length: 1004
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39


Found at i:738 original size:18 final size:18

Alignment explanation


    Indices: 715--749  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        705 TTCTGAAATA

                              
        715 TGGATTCTGAATTCTGAT
          1 TGGATTCTGAATTCTGAT

                      *      
        733 TGGATTCTGATTTCTGA
          1 TGGATTCTGAATTCTGA

        750 ATTCTGATTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.20, C:0.11, G:0.23, T:0.46


Consensus pattern (18 bp):   
TGGATTCTGAATTCTGAT

Found at i:750 original size:25 final size:24

Alignment explanation


    Indices: 719--769  Score: 84
    Period size: 25  Copynumber: 2.1  Consensus size: 24

        709 GAAATATGGA

                                     
        719 TTCTGAATTCTGATTGGATTCTGAT
          1 TTCTGAATTCTGATTGGATTCT-AT

                             *      
        744 TTCTGAATTCTGATTGGTTTCTAT
          1 TTCTGAATTCTGATTGGATTCTAT

              
        768 TT
          1 TT

        770 ATTTTGAAAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  24    4  0.16
  25   21  0.84

ACGTcount: A:0.18, C:0.12, G:0.18, T:0.53


Consensus pattern (24 bp):   
TTCTGAATTCTGATTGGATTCTAT
Done.