Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008363.1 Corchorus olitorius cultivar O-4 contig08390, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 846

Length: 1410
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31


Found at i:955 original size:33 final size:34

Alignment explanation


    Indices: 898--993  Score: 92
    Period size: 33  Copynumber: 2.9  Consensus size: 34

        888 AATTTGAGTG

                        **                     
        898 TTGTTTGTGATGGCACTAAA-TCTGTTTTAGG-TA
          1 TTGTTTGTGATGAAAC-AAATTCTGTTTTAGGCTA

                                             *
        931 TTGTTTGTGATGAAACAAATTCTGTTTT-GGCTG
          1 TTGTTTGTGATGAAACAAATTCTGTTTTAGGCTA

            * **                           
        964 CTAATTGTGATGAAA-ACAATTCTGTTTTAG
          1 TTGTTTGTGATGAAACA-AATTCTGTTTTAG

        994 TTGATCATAG


Statistics
Matches: 53,  Mismatches: 6, Indels: 7
        0.80            0.09        0.11

Matches are distributed among these distances:
  32    6  0.11
  33   46  0.87
  34    1  0.02

ACGTcount: A:0.25, C:0.09, G:0.22, T:0.44


Consensus pattern (34 bp):   
TTGTTTGTGATGAAACAAATTCTGTTTTAGGCTA
Done.