Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008366.1 Corchorus olitorius cultivar O-4 contig08393, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1022
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.26


Found at i:509 original size:21 final size:21

Alignment explanation


    Indices: 467--509  Score: 50
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        457 AACATCGCCT

                            **   
        467 GCCCGCGCGCGGCTTGGGTCA
          1 GCCCGCGCGCGGCTTGCCTCA

                 *         *     
        488 GCCCGTGCGCGGCTTTCCTCA
          1 GCCCGCGCGCGGCTTGCCTCA

             
        509 G
          1 G

        510 GCCCTATCGA


Statistics
Matches: 18,  Mismatches: 4, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.05, C:0.40, G:0.37, T:0.19


Consensus pattern (21 bp):   
GCCCGCGCGCGGCTTGCCTCA
Done.