Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008367.1 Corchorus olitorius cultivar O-4 contig08394, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1752
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36


Found at i:1235 original size:49 final size:47

Alignment explanation


    Indices: 1158--1298  Score: 169
    Period size: 49  Copynumber: 2.9  Consensus size: 47

       1148 CAAGCAATCC

                *      *                                    
       1158 TTTACTTTTCACTGCACTTTTTCTCAATTTTTACTACAAAATTGAACT
          1 TTTAATTTTCATTGCACTTTTTCTCAATTTTTA-TACAAAATTGAACT

                     *                                     *  
       1206 TTT-ATTTTTACTTGCATCTTTTTCTCAATTTTTAATACAAAATTGATCT
          1 TTTAATTTTCA-TTGCA-CTTTTTCTCAATTTTT-ATACAAAATTGAACT

                        *         *                      
       1255 TTTAATTTTCATCGCACTTTTTATCAATTTTT-TGACAAAATTGA
          1 TTTAATTTTCATTGCACTTTTTCTCAATTTTTAT-ACAAAATTGA

       1299 TTGGCACGCT


Statistics
Matches: 81,  Mismatches: 7, Indels: 11
        0.82            0.07        0.11

Matches are distributed among these distances:
  46    1  0.01
  47   15  0.19
  48   22  0.27
  49   36  0.44
  50    7  0.09

ACGTcount: A:0.28, C:0.16, G:0.05, T:0.51


Consensus pattern (47 bp):   
TTTAATTTTCATTGCACTTTTTCTCAATTTTTATACAAAATTGAACT
Done.