Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008380.1 Corchorus olitorius cultivar O-4 contig08407, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1168
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33


Found at i:240 original size:9 final size:9

Alignment explanation


    Indices: 222--259  Score: 69
    Period size: 9  Copynumber: 4.3  Consensus size: 9

        212 TTAATTCATT

                     
        222 TAATTT-CA
          1 TAATTTCCA

                     
        230 TAATTTCCA
          1 TAATTTCCA

                     
        239 TAATTTCCA
          1 TAATTTCCA

                     
        248 TAATTTCCA
          1 TAATTTCCA

               
        257 TAA
          1 TAA

        260 GTAATTTGGG


Statistics
Matches: 29,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   8    6  0.21
   9   23  0.79

ACGTcount: A:0.37, C:0.18, G:0.00, T:0.45


Consensus pattern (9 bp):   
TAATTTCCA

Done.