Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008382.1 Corchorus olitorius cultivar O-4 contig08409, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1746
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29


Found at i:1292 original size:16 final size:15

Alignment explanation


    Indices: 1254--1295  Score: 75
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       1244 CAGAGGTTTG

                           
       1254 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                           
       1269 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                        
       1284 ACTAGAAAACAA
          1 AC-AGAAAACAA

       1296 AGCAGAGTAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  15   17  0.65
  16    9  0.35

ACGTcount: A:0.67, C:0.14, G:0.07, T:0.12


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.