Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008388.1 Corchorus olitorius cultivar O-4 contig08415, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3504
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34


Found at i:543 original size:32 final size:32

Alignment explanation


    Indices: 502--570  Score: 111
    Period size: 32  Copynumber: 2.2  Consensus size: 32

        492 ATGTCAGAAG

                *               *        *  
        502 ATTATATATATTTTTTATGTTATATACTATAA
          1 ATTAAATATATTTTTTATGTAATATACTACAA

                                            
        534 ATTAAATATATTTTTTATGTAATATACTACAA
          1 ATTAAATATATTTTTTATGTAATATACTACAA

                 
        566 ATTAA
          1 ATTAA

        571 TGTAATTTAT


Statistics
Matches: 34,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  32   34  1.00

ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51


Consensus pattern (32 bp):   
ATTAAATATATTTTTTATGTAATATACTACAA

Found at i:599 original size:22 final size:22

Alignment explanation


    Indices: 574--616  Score: 61
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        564 AAATTAATGT

                     *             
        574 AATTTAT-ATTTATTTAATATAA
          1 AATTTATAAATTA-TTAATATAA

                                 
        596 AATTTATAAATTATTAATATA
          1 AATTTATAAATTATTAATATA

        617 TATATATATA


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  22   15  0.79
  23    4  0.21

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (22 bp):   
AATTTATAAATTATTAATATAA
Done.