Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008389.1 Corchorus olitorius cultivar O-4 contig08416, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 940

Length: 1568
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:904 original size:9 final size:10

Alignment explanation


    Indices: 885--910  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

        875 ACAATATTTC

                      
        885 AAAAATAAAA
          1 AAAAATAAAA

                      
        895 AAAAATAAAA
          1 AAAAATAAAA

                  
        905 AAAAAT
          1 AAAAAT

        911 TTCGACCAGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12


Consensus pattern (10 bp):   
AAAAATAAAA
Done.