Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000839.1 Corchorus olitorius cultivar O-4 contig00839, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1353
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35


Found at i:1331 original size:47 final size:47

Alignment explanation


    Indices: 1209--1345  Score: 129
    Period size: 48  Copynumber: 2.9  Consensus size: 47

       1199 GAGCGTGATA

                                     *       *  *      *      
       1209 ATCAATTTTGTCA--AAAAATTTGATAAAAAGTACAATGAAAATTAAAAG
          1 ATCAATTTTGT-AGTAAAAA-TTGAGAAAAAGTGCAGT-AAAAATAAAAG

                       **                                    
       1257 ATCAATTTTGTCTTAAAAATTGAG-AAAAGATGCAAGTAAAAATAAAAG
          1 ATCAATTTTGTAGTAAAAATTGAGAAAAAG-TGC-AGTAAAAATAAAAG

            *                     *                   
       1305 TTCAATTTTGTAGT-AAAATTGTGAAAAAGTGCAGTAAAAAT
          1 ATCAATTTTGTAGTAAAAATTGAGAAAAAGTGCAGTAAAAAT

       1346 GTAAAGGA


Statistics
Matches: 75,  Mismatches: 9, Indels: 12
        0.78            0.09        0.12

Matches are distributed among these distances:
  46    9  0.12
  47   16  0.21
  48   43  0.57
  49    7  0.09

ACGTcount: A:0.50, C:0.06, G:0.14, T:0.30


Consensus pattern (47 bp):   
ATCAATTTTGTAGTAAAAATTGAGAAAAAGTGCAGTAAAAATAAAAG
Done.