Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008391.1 Corchorus olitorius cultivar O-4 contig08418, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 730

Length: 1218
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:677 original size:154 final size:153

Alignment explanation


    Indices: 397--892  Score: 821
    Period size: 154  Copynumber: 3.2  Consensus size: 153

        387 CTTGGCGCAT

                                                                             
        397 CAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAAATTAGTC
          1 CAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAAATTAGTC

                            *                             *    *             
        462 CACTGTGAAGTTTTTAACTCATTTGGAACACTTGTTATTTTGGGCCTATCGCGGCCCATTAGTGA
         66 CACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGG-CAATCGGGGCCCATTAGTGA

             *                      
        527 CGTTTTGAATCGTCTTCGATTTGG
        130 CATTTTGAATCGTCTTCGATTTGG

                                              *             *        *   *   
        551 CAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCAATTTGGTGAGATTTGTC
          1 CAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAAATTAGTC

                        *                                                    
        616 CACTGTGAAGTTCTTAGCTCATTTGGAACACTTGTTATTTTGGGTCAATCGGGGCCCATTAGTGA
         66 CACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGG-CAATCGGGGCCCATTAGTGA

                                    
        681 CATTTTGAATCGTCTTCGATTTGG
        130 CATTTTGAATCGTCTTCGATTTGG

                                                                *            
        705 CAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTCGTGAAATTAGTC
          1 CAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAAATTAGTC

                 *                                                  *      **
        770 CACTGAGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCATATCGGGGCCAATTAGTTC
         66 CACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCA-ATCGGGGCCCATTAGTGA

                  *       *         
        835 CATTTTCAATCGTCCTCGATTTGG
        130 CATTTTGAATCGTCTTCGATTTGG

                                              
        859 CAAACCTCAATGCTTTTCTTTCCATTGTTTATGG
          1 CAAACCTCAATGCTTTTCTTTCCATTGTTTATGG

        893 TGATACGAAT


Statistics
Matches: 319,  Mismatches: 22, Indels: 2
        0.93            0.06        0.01

Matches are distributed among these distances:
 153    2  0.01
 154  317  0.99

ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40


Consensus pattern (153 bp):   
CAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAAATTAGTC
CACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCAATCGGGGCCCATTAGTGAC
ATTTTGAATCGTCTTCGATTTGG
Done.