Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008392.1 Corchorus olitorius cultivar O-4 contig08419, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8678
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31


Found at i:2648 original size:14 final size:15

Alignment explanation


    Indices: 2629--2662  Score: 61
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       2619 CCTAATAATC

                           
       2629 AAATTAT-AAAAAAA
          1 AAATTATGAAAAAAA

                           
       2643 AAATTATGAAAAAAA
          1 AAATTATGAAAAAAA

                 
       2658 AAATT
          1 AAATT

       2663 TAGAATTTAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  14    7  0.37
  15   12  0.63

ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24


Consensus pattern (15 bp):   
AAATTATGAAAAAAA

Done.