Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008395.1 Corchorus olitorius cultivar O-4 contig08422, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 787

Length: 1313
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:472 original size:33 final size:33

Alignment explanation


    Indices: 358--472  Score: 99
    Period size: 33  Copynumber: 3.5  Consensus size: 33

        348 CGCCCCAAGG

                       *                     
        358 GGGGCGCCACCACCATGCCGACGGCG-CCCCCA
          1 GGGGCGCCACCGCCATGCCGACGGCGCCCCCCA

                         ***  **    *       *  
        390 GGGGGCGCCACCGATTTGGTGACGTCGCCCCGGCA
          1 -GGGGCGCCACCGCCATGCCGACGGCGCCCC-CCA

                     *                      *
        425 GGGG-GCCATCGCCATGCCGACGGCGCCCCCCT
          1 GGGGCGCCACCGCCATGCCGACGGCGCCCCCCA

                      *     
        457 GGGGCGCCACTGCCAT
          1 GGGGCGCCACCGCCAT

        473 TTTTTCTATA


Statistics
Matches: 60,  Mismatches: 19, Indels: 6
        0.71            0.22        0.07

Matches are distributed among these distances:
  32    5  0.08
  33   46  0.77
  34    7  0.12
  35    2  0.03

ACGTcount: A:0.12, C:0.43, G:0.36, T:0.10


Consensus pattern (33 bp):   
GGGGCGCCACCGCCATGCCGACGGCGCCCCCCA
Done.