Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008401.1 Corchorus olitorius cultivar O-4 contig08428, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1804
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32


Found at i:104 original size:20 final size:18

Alignment explanation


    Indices: 65--100  Score: 54
    Period size: 18  Copynumber: 1.9  Consensus size: 18

         55 CTAGCCCTAA

                          *   
         65 AACTAGAAGAAAAACTAG
          1 AACTAGAAGAAAAAATAG

                              
         83 AACTAGAAGAGAAAAATA
          1 AACTAGAAGA-AAAAATA

        101 AGAAGAAAAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18   10  0.62
  19    6  0.38

ACGTcount: A:0.64, C:0.08, G:0.17, T:0.11


Consensus pattern (18 bp):   
AACTAGAAGAAAAAATAG
Done.