Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008404.1 Corchorus olitorius cultivar O-4 contig08431, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25


Found at i:494 original size:51 final size:51

Alignment explanation


    Indices: 420--529  Score: 220
    Period size: 51  Copynumber: 2.2  Consensus size: 51

        410 TGCCGCAAAG

                                                               
        420 AAGGGCATGGTAGGTTTCATGGGTGTGCACAGTTGCTAACCATTTGGTTCA
          1 AAGGGCATGGTAGGTTTCATGGGTGTGCACAGTTGCTAACCATTTGGTTCA

                                                               
        471 AAGGGCATGGTAGGTTTCATGGGTGTGCACAGTTGCTAACCATTTGGTTCA
          1 AAGGGCATGGTAGGTTTCATGGGTGTGCACAGTTGCTAACCATTTGGTTCA

                    
        522 AAGGGCAT
          1 AAGGGCAT

        530 TTTAGAAAAC


Statistics
Matches: 59,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  51   59  1.00

ACGTcount: A:0.23, C:0.15, G:0.32, T:0.30


Consensus pattern (51 bp):   
AAGGGCATGGTAGGTTTCATGGGTGTGCACAGTTGCTAACCATTTGGTTCA
Done.