Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008409.1 Corchorus olitorius cultivar O-4 contig08436, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 698

Length: 1164
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35


Found at i:214 original size:10 final size:10

Alignment explanation


    Indices: 201--225  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

        191 ACATTAATAC

                      
        201 TAATTGATTT
          1 TAATTGATTT

                      
        211 TAATTGATTT
          1 TAATTGATTT

                 
        221 TAATT
          1 TAATT

        226 TGATCAATAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60


Consensus pattern (10 bp):   
TAATTGATTT

Found at i:771 original size:21 final size:21

Alignment explanation


    Indices: 747--793  Score: 85
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        737 ATTATATATA

                                 
        747 TGATTTATAATCTCTATCAAT
          1 TGATTTATAATCTCTATCAAT

                                 
        768 TGATTTATAATCTCTATCAAT
          1 TGATTTATAATCTCTATCAAT

            *    
        789 AGATT
          1 TGATT

        794 AAATAGTATT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.34, C:0.13, G:0.06, T:0.47


Consensus pattern (21 bp):   
TGATTTATAATCTCTATCAAT
Done.