Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008410.1 Corchorus olitorius cultivar O-4 contig08437, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1120
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43


Found at i:177 original size:2 final size:2

Alignment explanation


    Indices: 170--194  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

        160 TATTGCACAA

                                                 
        170 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A

        195 CGTGTAAGGT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.