Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008415.1 Corchorus olitorius cultivar O-4 contig08442, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 674

Length: 1124
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32


Found at i:568 original size:22 final size:22

Alignment explanation


    Indices: 543--592  Score: 100
    Period size: 22  Copynumber: 2.3  Consensus size: 22

        533 CACAGGCGAC

                                  
        543 GACTTTGAGAGATTGAGCGAGA
          1 GACTTTGAGAGATTGAGCGAGA

                                  
        565 GACTTTGAGAGATTGAGCGAGA
          1 GACTTTGAGAGATTGAGCGAGA

                  
        587 GACTTT
          1 GACTTT

        593 AGCTCAACCT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   28  1.00

ACGTcount: A:0.30, C:0.10, G:0.34, T:0.26


Consensus pattern (22 bp):   
GACTTTGAGAGATTGAGCGAGA
Done.