Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008416.1 Corchorus olitorius cultivar O-4 contig08443, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1013
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33


Found at i:712 original size:21 final size:21

Alignment explanation


    Indices: 686--777  Score: 132
    Period size: 21  Copynumber: 4.4  Consensus size: 21

        676 TGCTAGAAGT

                                  
        686 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                     *          *
        707 TCATTGGAGCAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
        728 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGC

                           *     
        749 TCATTGGAGAAGGTTTCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                    
        770 TCATTGGA
          1 TCATTGGA

        778 AATGCCTAAG


Statistics
Matches: 64,  Mismatches: 6, Indels: 2
        0.89            0.08        0.03

Matches are distributed among these distances:
  20    1  0.02
  21   63  0.98

ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC

Done.