Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008417.1 Corchorus olitorius cultivar O-4 contig08444, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 904

Length: 1508
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32


Found at i:1077 original size:50 final size:47

Alignment explanation


    Indices: 975--1117  Score: 162
    Period size: 49  Copynumber: 3.0  Consensus size: 47

        965 GAGCGTGCCA

                        *         *         *       *      
        975 ATCAATTTTGTCAAAAAATTGATAAAAAGTGCGATGAAAATTAAAAG
          1 ATCAATTTTGTCTAAAAATTGAGAAAAAGTGCAATGAAAAATAAAAG

                                                               
       1022 ATCAATTTTGTCTTTAAAAATTGAGAAAAAGATGCAA-GTAAAAATAAAAG
          1 ATCAATTTTGTC--TAAAAATTGAGAAAAAG-TGCAATG-AAAAATAAAAG

            *           *                     *      *    
       1072 TTCAATTTTGTAGTAAAAATTGAGAAAAAGTGCAGTGAAAAGTAAA
          1 ATCAATTTTGT-CTAAAAATTGAGAAAAAGTGCAATGAAAAATAAA

       1118 GGATTGCTTG


Statistics
Matches: 82,  Mismatches: 8, Indels: 11
        0.81            0.08        0.11

Matches are distributed among these distances:
  47   12  0.15
  48   12  0.15
  49   34  0.41
  50   24  0.29

ACGTcount: A:0.50, C:0.06, G:0.16, T:0.28


Consensus pattern (47 bp):   
ATCAATTTTGTCTAAAAATTGAGAAAAAGTGCAATGAAAAATAAAAG
Done.