Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008419.1 Corchorus olitorius cultivar O-4 contig08446, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 663

Length: 1106
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:874 original size:102 final size:103

Alignment explanation


    Indices: 694--883  Score: 276
    Period size: 102  Copynumber: 1.8  Consensus size: 103

        684 TCAAGGGAGC

                                                                             
        694 TTTTGTTCATCTCTTTTCTCTTTTGATTGGATATCATATTGAGTCCCGACTAATCTTAAATCGAG
          1 TTTTGTTCATCTC-TTTCTCTTTTGATTGGATATCATATTGAGTCCCGACTAATCTTAAATCGAG

                *  **                              
        759 CCATGTCGGACCTAGTTAATTAAGGGAATTTATGAGAAT
         65 CCATATCAAACCTAGTTAATTAAGGGAATTTATGAGAAT

                                    *               *     *          * *     
        798 TTTTGTTCATCTC-TTCTCTTTTGGTTGGATATCATATTGGGTCCCTACTAAT-TTGGAGTCGAG
          1 TTTTGTTCATCTCTTTCTCTTTTGATTGGATATCATATTGAGTCCCGACTAATCTT-AAATCGAG

                                   
        861 CCATATCAAACCTAGTTAATTAA
         65 CCATATCAAACCTAGTTAATTAA

        884 TTAAGGGAGT


Statistics
Matches: 77,  Mismatches: 8, Indels: 4
        0.87            0.09        0.04

Matches are distributed among these distances:
 101    2  0.03
 102   62  0.81
 104   13  0.17

ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41


Consensus pattern (103 bp):   
TTTTGTTCATCTCTTTCTCTTTTGATTGGATATCATATTGAGTCCCGACTAATCTTAAATCGAGC
CATATCAAACCTAGTTAATTAAGGGAATTTATGAGAAT
Done.