Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008422.1 Corchorus olitorius cultivar O-4 contig08449, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 854

Length: 1424
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31


Found at i:1047 original size:30 final size:30

Alignment explanation


    Indices: 1013--1106  Score: 145
    Period size: 30  Copynumber: 3.1  Consensus size: 30

       1003 GTTAAATTCA

                            *              
       1013 TTGGG-CCTATTTTAAAGTGTGTGAAGTATG
          1 TTGGGCCCT-TTTTAATGTGTGTGAAGTATG

                                          
       1043 TTGGGCCCTTTTTAATGTGTGTGAAGTATG
          1 TTGGGCCCTTTTTAATGTGTGTGAAGTATG

                                   *   *  
       1073 TTGGGCCCTTTTTAATGTGTGTGGAGTGTG
          1 TTGGGCCCTTTTTAATGTGTGTGAAGTATG

                
       1103 TTGG
          1 TTGG

       1107 TGGGCCTATA


Statistics
Matches: 60,  Mismatches: 3, Indels: 2
        0.92            0.05        0.03

Matches are distributed among these distances:
  30   57  0.95
  31    3  0.05

ACGTcount: A:0.16, C:0.09, G:0.33, T:0.43


Consensus pattern (30 bp):   
TTGGGCCCTTTTTAATGTGTGTGAAGTATG
Done.