Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008425.1 Corchorus olitorius cultivar O-4 contig08452, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 985

Length: 1642
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.36


Found at i:61 original size:26 final size:26

Alignment explanation


    Indices: 27--80  Score: 99
    Period size: 26  Copynumber: 2.1  Consensus size: 26

         17 ATTTGTTTGT

                       *              
         27 TTAATTGGTAGGTAGGTATTTAGATG
          1 TTAATTGGTAGATAGGTATTTAGATG

                                      
         53 TTAATTGGTAGATAGGTATTTAGATG
          1 TTAATTGGTAGATAGGTATTTAGATG

              
         79 TT
          1 TT

         81 TGGATACGTT


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44


Consensus pattern (26 bp):   
TTAATTGGTAGATAGGTATTTAGATG
Done.