Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008430.1 Corchorus olitorius cultivar O-4 contig08457, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1803
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:662 original size:31 final size:34

Alignment explanation


    Indices: 614--704  Score: 116
    Period size: 32  Copynumber: 2.7  Consensus size: 34

        604 AGTCTTCGAA

                                     *         
        614 GTTTTCAAATTGGGAAAGTTCCCACCAGGTTTTA-
          1 GTTTT-AAATTGGGAAAGTTCCCACAAGGTTTTAG

                                        *      
        648 GTTTT-AATT-GGAAAGTTCCCAACAAGTTTTTAG
          1 GTTTTAAATTGGGAAAGTTCCC-ACAAGGTTTTAG

                                    
        681 GTTTTAAAATTGGGAAAGTTCCCA
          1 GTTTT-AAATTGGGAAAGTTCCCA

        705 TTCAGTTTTT


Statistics
Matches: 50,  Mismatches: 2, Indels: 9
        0.82            0.03        0.15

Matches are distributed among these distances:
  31   11  0.22
  32   13  0.26
  33    5  0.10
  34    5  0.10
  35    5  0.10
  36   11  0.22

ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36


Consensus pattern (34 bp):   
GTTTTAAATTGGGAAAGTTCCCACAAGGTTTTAG
Done.